I have put together a full list of all the steps of the experiment in the document:

Full Experiment Data List - This document explains all the phases of the experiment with links to the pertinent blog entries and the raw data files.  

This should help those of you with questions about the bigger picture and where the experiment sits and what has been done.  Please ask for clarification so we can improve the document.

You can also find this in the Replicate => Initial Replication Experiment along with the rest of the details about the apparatus.